is it pregnancy or plan b that is causing me to miss my period?

I took plan b at the end of August due to the condom breaking. This is the second time I've taken it, so I feel it has affected my body a little more. My first initial period after taken plan b was on time. However, my second period was late by a few days. Now I am on my third period since taken the pill & my period is late yet again. 
I have had sex since my last period, 1 time protected & the next not, only because I thought I wasn't fertile. I am 2 days late & I took a pregnancy test this morning & I believe it was negative. So, can plan b still be affecting my cycle? & can I trust this result or should I test again?