Bad eating habits and no period. Help?!

So I've always struggled with having normal eating habits. I don't know how to describe it but I wake up and don't really eat anything until at least 4pm because I never get hungry. None of this is intentional. 
I've always been super skinny due to my lack of thyroid (born without one), however I've lost tons of weight within the past couple of months. I'm 5 foot 6 and was 128 about a year ago and stayed that way until a few months ago. I'm now 108 pounds and haven't gotten my legitimate period in at least 2 months. It's just been this nasty brown discharge (sorry, only way to describe it) and I'm starting to get worried. I'm on birth control but it's never affected (effected?) me in a negative way. 
I don't know, sorry this was so long. Should I see a doctor? I feel like the period and eating issue are connected somehow.