Should I be worried?

Emily • I`m naturally happy. Currently practicing phlebotomy. I have been with my boyfriend for 3 years, he`s my best friend.
So, I had the MIRENA for two years and I always had my periods. The last couple months I had bad pain, I had it removed. The pain went away. It's only been three weeks and I've bleed for two of them and now I have dark discharge that isn't old blood. I've been sick to my stomach and had migraines and weird cravings since then as well. We have had sex but used protection. I took a test and it said negative. I just have a bad feeling. Should I be worried? 

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