Clomid Cysts

Amber
Has anyone had to wait until their Clomid cysts go away from their last cycle in order to start fertility drugs?? I have four Clomid cysts and I am on day 3 of my period. They want me to come back in two weeks to check to see if Clomid cysts went away. Isn't this too late? Could I ovulate before then and not be able to start fertility drugs?? I am feeling very down about everything and I just want to start the process. Thanks so much.