Can you get an STD from using condoms everytime easily?

It burns when I pee on the left side of my inner labia. It started getting irritated when I was too horny with my boyfriend after sex and he was rubbing me really hard.

It is only on that one side and it burns when pee hits it. It is getting better everyday though.

Can rough masterbation really do that or could it be an STD? I have never not ised a condom. I am 20 and got checked in July and I was clean.