Completely irregular

We have just started ttc baby number 2. I have endometriosis (was told couldn't get pregnant the first time) and my cycle is irregular. I've been tracking for months and there is no rhyme or reason and I have ovulation and pms pain but sometimes it's hard to tell if it's either of those or endo pain.  By the apps predictions af is due 6/23 but it could be earlier. If it is that date then I ovulated this week. 
Im a nurse so I know all about the physiology of what's going on but I just need someone to help me not feel so crazy.  I'm cramping and it can literally be ovulation, implantation, endometriosis, or pms depending on the timing. 
So ladies, is anyone else out there feeling a bit crazy by their irregular periods? And how are you handling it?