Hoarse toddler cry it out?

my 20 month old had a cold and so I let her sleep with me in my bed so I could monitor her fever.... well now she won’t sleep in her room. I want to just let her cry it out but her voice is soooo hoarse from this cold she’s getting over... I don’t want her to damage it even more, but I also don’t want to make this bad habit worse.. what should I do?